1. Angry Eyes
It's now C.E. 73 and three of ZAFT's newest mobile suits are stolen. During the highjacking, Cagalli, now Orb's head of state, and Athrun, now her bodyguard, are meeting with ZAFT's new head honcho.
Mobile Suit Gundam SEED
Mobile Suit Gundam SEED Destiny
In the year C.E.70, the conflict between the Z.A.F.T. Forces and the O.M.N.I. Enforcer has erupted into armed warfare of the highest intensity in the wake of the "Bloody Valentine" catastrophe. An armistice is signed following the Second Battle of Yakin Deyue, which saw massive casualties, but no armistice could extinguish the hostilities that existed between the Naturals and the Coordinators. Shinn Asuka finds himself caught up in the O.M.N.I. Enforcers' Orb Operation, and sees his parents and sister killed before his very eyes by the fighting.
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2. Those Who Call for War
Shinn continues to battle the three stolen suits. In the midst of battle, the three machines work to escape from Armory-1 and rendevous with their ship, Earth's "Girtty Lue", which is under the command of the mysterious Neo Roanoake.
3. Warning Shots
After the Minerva launches from Armory-1, the battle against the Girty Lue ends, for the time being. However, Girty Lue launches another attack preventing the crew from having much time to regroup.
4. Stardust Battlefield
During the battle with the Girty Lue, Athrun helps the Minerva out of a bind with his strategizing.
5. Scars That Won't Heal
As Junius-7 plummets towards the Earth, the Minerva team-up with the Joule team to try and destroy it.
6. The End of the World
The battle on Junius-7 instifies, as the Gaia, Chaos & Abyss make the Joule team's attempt at the destroying the falling colony much more difficult.
7. Land of Confusion
As a last ditch effort, the Mireva uses is Tanhäuser to break up the remaining chunk of Junius-7. Unfortunatey, several of the pieces fall to Earth destroying several of Earth's cities. The battle-damaged Minerva makes its way to Orb to re-supply and to drop Cagalli off.
8. Junction
The Minerva arrives at Orb. While the crew enjoys some downtime. Cagalli learns some unsettling information about the future of Orb. While Athrun decides to return to PLANT once more and meet with Dullindal.
9. Bared Fangs
Eager for retaliation, the Atlantic Federation declares war on ZAFT (who they blame for the Junius-7 drop). In defense of the oncoming nuclear onslaught, ZAFT unleashes its newest weapon, the Neutron Stampeder, against the Atlantic Federation forces.
10. A Father's Spell
As Athrun meets with Dullindal, the Dullindal-endorsed psedo-Lacus, Meer Campbell, rallies the citizens of the PLANT's look away from war and look towards peace. Later, Dullindal offers Athrun a chance to pilot one of ZAFT's newest mobile suits, the ZGMF-X23S Saviour.
11. The Chosen Path
Orb decides to ally itself with the Atlantic Federation, much to Cagalli's dismay. While about the PLANT's, Athrun recieves some help making his decision from some old comrades.
12. Blood in the Water
After departing Orb, the Minerva is thrown into battle against an Atlantic Federation fleet. Due to their new alliance with the Federation, Orb quickly sets up a baracade of ships preventing the Minerva from retreat back to the safety of Orb territory.
13. Resurrected Wings
As the Minerva's crew congratulates Shinn on his job well done, Kira is forced to take the Freedom out into battle once again to take out the assassins that are after Lacus.
14. Flight to Tomorrow
Kira, Lacus, and the remaining Archangel crew embark on their old vessel and depart, but not before Kira rescues Cagalli from her wedding to Yuna.
15. Return to the Battlefield
Athrun, now a member of the super elite ZAFT task force FAITH, returns to the Minerva. Once aboard, he delivers the Minerva's new mission to Talia.
16. Struggle in the Indian Ocean
The Minerva engages Neo and the 3 stolen Mobile Suits in a battle over the Indian Ocean.
17. The Soldier's Life
The Minerva lands at ZAFT's Muhamal base and gets details on their next assignment. Later, Athrun has a "heart-to-heart" conversation with Shinn.
18. Attack the Lohengrin!
The Minerva must destroy a fixed positron cannon emplacement to break through to Gibraltar. Though hesitant at first after meeting Shinn, they are helped by a young resistance fighter named Coniel, who provides data of a secret tunnel that will lead near the positron cannon. The Minerva and the other ZAFT forces draw out the Earth Alliance mobile suits and mobile armor while Shinn heads through the tunnel and destroys the cannon.
19. The Hidden Truth
Shinn narrates flashbacks covering the events that have transpired in Gundam SEED and SEED Destiny. He also sheds some light on how he got to the PLANT's after his tragic loss in Orb.
20. Past
After a misunderstanding between Athrun, Lunamaria and Meer, Shinn takes advantage of his shore leave by exploring the countryside. On his travels he stumbles across Stellar dancing on a cliff, she then accidentally falls into the sea. Shinn dives in after her. While waiting to be rescued, Shinn and Stellar share some bonding time.
21. Wandering Eyes
An EA fleet led by Orb forces heads towards to Black Sea to deal a critical blow to ZAFT. However, a third party is waiting in the wings to stop the battle.
22. Sword of the Blue Skies
Cagalli's attempts to stop the Orb fleet fails and a battle between the Minerva, Orb/EA fleet and the Archangel breaks out.
23. The Shadows of War
With Milliaria's help, Athrun is able to meet up with Kira and Cagalli to discuss recent events.
24. Differing Views
With Milliaria's help, Athrun is able to meet up with Kira and Cagalli to discuss recent events.